PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013583582.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 352aa    MW: 40140.4 Da    PI: 6.4538
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013583582.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++lvd+++q+G g+W+t ++  g+ R++k+c++rw +yl
   XP_013583582.1 14 KGPWTSEEDQKLVDYIQQHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding52.11.5e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
   XP_013583582.1  67 RGRFSLEEEETIIHLHSFLGNK-WSAIAARLP-GRTDNEIKNFWNTH 111
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.203961IPR017930Myb domain
SuperFamilySSF466897.11E-3111108IPR009057Homeodomain-like
SMARTSM007177.8E-131363IPR001005SANT/Myb domain
PfamPF002495.2E-161461IPR001005SANT/Myb domain
CDDcd001675.15E-121661No hitNo description
PROSITE profilePS5129424.45562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-2665116IPR009057Homeodomain-like
SMARTSM007174.9E-1566114IPR001005SANT/Myb domain
PfamPF002497.9E-1567111IPR001005SANT/Myb domain
CDDcd001673.74E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGRSPCCEKT GLKKGPWTSE EDQKLVDYIQ QHGYGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SLEEEETIIH LHSFLGNKWS AIAARLPGRT DNEIKNFWNT HIRKKLLRMG  120
IDPVTHSPRL DLLDISSILV SSLYNSSSHH VNMSRLMMDA HRQQQQHPLV NPEILKLATS  180
LFSQNQTQNH NQNQNFVVDH DTNTHEHHSV YHQDVNQAEV NQYQTGHQDY QPCMPPFPNE  240
AQFNDMGHQF NGFGEQALAS TSNTSVQDCN IPSFNNFANS SFVLDPSYSD QSFSFANSVL  300
NTPSSSPTTL NSSSTTYINS SSCNTEDEME SYCSNLVKFD ISDFLDVNDF LI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0872521e-177AY087252.1 Arabidopsis thaliana clone 33333 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013583582.10.0PREDICTED: transcription factor MYB39
TrEMBLA0A0D3A4U80.0A0A0D3A4U8_BRAOL; Uncharacterized protein
STRINGBra013526.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-169MYB-like 102